Histological atlas of the Human Developing Brain
Resources for our Cell Detection and Data for the Human Developing Brain
Datasets Available (High resolution data upload in progress and will be made available when complete. Printable (pdf) and Volumetric data is available for download in the dryad link below)
- 14GW (S5/FB40) Atlas pdf High Resolution Viewer, Dryad
- 13GW (S3/FB36) High Resolution Viewer, Dryad
- 13GW (S4/FB63) High Resolution Viewer, Dryad
- 21GW (S2/FB10) Atlas_pdf, High Resolution Viewer, Dryad
- 21GW (S1/FB3) High Resolution Viewer, Dryad
- 24GW (S6/FB85) Atlas_pdf, High Resolution Viewer, Dryad
Cell detection algorithms
- Current cell detection Algorithm Link to Github
- Model_1 (MEDIAR) Code Link to Github
- Model_2 (Multistream Cell Segmentation) Code Link to Github
- Repo for Evaluation and Colab notebooks to run the above codes Link to Github
Expectation Maximization Large Deformation Diffeomorphic Metric Mapping (EMLDDMM) registration
- Registration Link to GitHub
Data Samples for Cell Detection
Publications
- Partha Mitra, Jaikishan Jayakumar, Mohanasankar Sivaprakasam et al. A three-dimensional histological cell atlas of the developing human brain, 10 January 2025, PREPRINT (Version 1) available at Research Square. Link(https://doi.org/10.1038/s41592-024-02233-6).